UPDATE (February 2022):
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Datasets details
The table with datasets general information (below) is available here
Abbreviations:
- DFS: Disease Free Survival
- ER: Estrogen Receptor
- MFS: Metastasis Free Survival
- OS: Overall Survival
Click on ? (on the column names) to learn more about the information contained in each column.
| Cancer Study | Reference | Data source | Platform | Cohort size | Subtype ? | ER status ? | DFS data |
|---|---|---|---|---|---|---|---|
| Ivshina et al. | PMID: 17079448 | GSE4922 | GPL97 Affymetrix* | 289 | No | Pos: 211 Neg: 34 ?: 4 Null: 40 | Yes |
| Lu et al. | PMID: 18297396 | GSE5460 | GPL570 Affymetrix* | 129 | Basal: 32 HER2: 31 Luminal: 61 Null: 5 | Pos: 76 Neg: 53 | Yes |
| METABRIC | PMID: 22522925 | cBioPortal | Illumina Human v3 microarray | 1904 | Basal: 199 HER2: 220 Luminal A: 679 Luminal B: 461 Normal-like: 140 Claudin-low: 199 NC: 6 | Pos: 1445 Neg: 429 ?: 30 | Yes |
| Pawitan et al. | PMID: 16280042 | GSE1456 | GPL97 Affymetrix* | 159 | Basal: 25 HER2: 15 Luminal A: 39 Luminal B: 23 Normal-like: 37 Null: 20 | No | Yes |
| TCGA | TCGA | cBioPortal (Firehose Legacy) & cBioPortal (Nature) | RNA Seq | 1093 | Basal: 97 HER2: 58 Luminal A: 231 Luminal B: 127 Normal-like: 8 Null: 572 | Pos: 806 Neg: 237 ?: 2 Null: 48 | Yes |
| Wang et al. | PMID: 15721472 | GSE2034 | GPL96 Affymetrix* | 286 | No | Pos: 209 Neg: 77 | Yes |
| Cancer Study | Reference | Data source | Platform | Cohort size | Subtype ? | Gender | Location data | Stage data | DFS data |
|---|---|---|---|---|---|---|---|---|---|
| Colonomics | Colonomics | GSE44076 | GPL13667 Affymetrix* | 246 | PT: 98 N Adj: 98 N: 50 | Male: 169 Female: 77 | Yes | Yes | No |
| Jorissen et al. | PMID: 19996206 | GSE14333 | GPL570 Affymetrix* | 290 | PT: 290 | Male: 164 Female: 126 | Yes | No | Yes |
| Kemper et al. | PMID: 22496204 | GSE33113 | GPL570 Affymetrix* | 96 | PT: 90 N: 6 | Male: 42 Female: 48 Null: 6 | No | No | Yes |
| Laibe et al. | PMID: 22917480 | GSE37892 | GPL570 Affymetrix* | 130 | PT: 130 | Male: 69 Female: 61 | Yes | Yes | No |
| Marisa et al. | PMID: 23700391 | GSE39582 | GPL570 Affymetrix* | 585 | PT: 566 N: 19 | Male: 322 Female: 263 | Yes | Yes | Yes |
| Roepman et al. | PMID: 23852808 | GSE42284 | GPL16280 Agilent (custom-commercial) | 188 | PT: 188 | Male: 84 Female: 104 | Yes | Yes | No |
| TCGA | TCGA | cBioPortal (Firehose Legacy) | RNA Seq | 376 | PT: 376 | Male: 207 Female: 169 | Yes | Yes | Yes |
| Cancer Study | Reference | Data source | Platform | Cohort size | Subtype ? | Stage | OS data | MFS data | DFS data | EGFR mutant ? | KRAS mutant ? |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chitale et al. | PMID: 19525976 | Donated | Microarray* | 128 | PT: 128 | Yes | Yes | Yes | No | Non mut: 102 Mut: 26 | Non mut: 96 Mut: 32 |
| Okayama et al. | PMID: 22080568 | GSE31210 | GPL570 Affymetrix* | 246 | PT: 226 N: 20 | Yes | Yes | No | Yes | Non mut: 119 Mut: 127 | Non mut: 226 Mut: 20 |
| Shedden et al. | PMID: 18641660 | Donated | Microarray* | 442 | PT: 442 | No | Yes | No | No | No | No |
| TCGA | TCGA | cBioPortal (Firehose Legacy) | RNA Seq | 515 | PT: 515 | Yes | Yes | No | Yes | No | No |
| Wilkerson et al. | PMID: 22590557 | GSE36471 | GPL9053 Agilent (custom-commercial) | 116 | PT: 116 | Yes | Yes | No | No | Non mut: 70 Mut: 11 Null: 35 | Non mut: 89 Mut: 20 Null: 7 |
| Cancer Study | Reference | Data source | Platform | Cohort size | Subtype ? | Gleason Score | DFS data |
|---|---|---|---|---|---|---|---|
| Glinsky et al. | PMID: 15067324 | Donated by MSKCC | Affymetrix* | 79 | PT: 79 | Yes | Yes |
| Grasso et al. | PMID: 22722839 | GSE35988 | GPL6480 Agilent | 88 | PT: 49 Met: 27 N: 12 | No | No |
| Lapointe et al. | PMID: 14711987 | GSE3933 | GPL2695 non-commercial | 26 | PT: 13 Met: 4 N: 9 | No | No |
| Taylor et al. | PMID: 20579941 | GSE21032 | GPL10264 Affymetrix* (custom-commercial) | 183 | PT: 131 Met: 19 N: 29 Others: 4 | Yes | Yes |
| TCGA | TCGA | Firehose Broad | RNA Seq | 497 | PT: 497 | Yes | Yes |
| Tomlins et al. | PMID: 17173048 | GSE6099 | GPL2013 non-commercial | 104 | PT: 32 Met: 20 N: 23 Others: 29 | No | No |
| Varambally et al. | PMID: 16286247 | GSE3325 | GPL570 Affymetrix* | 19 | PT: 7 Met: 6 N: 6 | No | No |