Publications

2012

Fullaondo A, Lee SY (2012).
Regulation of Drosophila-virus interaction.
Dev Comp Immunol.
36, 2, 262-6.
Fullaondo A, Lee SY (2012).
Identification of putative miRNA involved in Drosophila melanogaster immune response.
Dev Comp Immunol.
36, 2, 267-73.

2011

Carina Elizalde, Victor M. Campa, Mercedes Caro, Karin Schlangen, Ana M. Aransay, Maria dM Vivanco, Robert M. Kypta (2011).
Distinct roles for Wnt-4 and Wnt-11 during retinoic acid-induced neuronal differentiation
Stem Cells
29,141-153.
Díaz-Peña R, Aransay AM, Bruges-Armas J, López-Vázquez A, Rodríguez-Ezpeleta N, Mendibil I, Sánchez A, Torre-Alonso JC, Bettencourt BF, Mulero J, Collantes E, López-Larrea C(2011).
Fine mapping of a major histocompatibility complex in ankylosing spondylitis: Association of the HLA-DPA1 and HLA-DPB1 regions.
Arthritis Rheum.
63(11),3305-12.
Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM (2011).
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.
Nucleic Acids Res.
39.
Vandenbroeck K, Alvarez J, Swaminathan B, Alloza I, Matesanz F, Urcelay E, Comabella M, Alcina A, Fedetz M, Ortiz MA, Izquierdo G, Fernandez O, Rodriguez-Ezpeleta N, Matute C, Caillier S, Arroyo R, Montalban X, Oksenberg JR, Antigüedad A, Aransay A (2011).
A cytokine gene screen uncovers SOCS1 as genetic risk factor for multiple sclerosis.
Genes Immun.
Fullaondo A, S. García-Sánchez, A. Sanz-Parra, E. Recio, S-Y. Lee and D. Gubb (2011).
Spn1 regulates the GNBP3-dependent Toll-signalling pathway in Drosophila melanogaster
MCB.
(in press).

2010

Aransay A.M., Matthiesen R. and Regueiro M.M. (2010).
SNP-PHAGE. High throughput SNP discovery pipeline.
Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)
593:49-65.
Baurain D., Brinkmann H., Petersen J., Rodríguez-Ezpeleta N., Stechmann A., Demoulin V., Roger A.J., Burger G., Lang B.F., Philippe H. (2010).
Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes and stramenopiles.

Mol Biol Evol.
27:1698-709.
Gubb E. and Matthiesen R. (2010).
Introduction to omics.
Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)
593:1-23.
Rodríguez-Ezpeleta N., Álvarez-Busto J., Imaz L., Regueiro M., Azcárate M.N., Bilbao R., Iriondo M., Gil A., Estonba A., Aransay A.M. (2010).
High-density SNP genotyping detects homogeneity of Spanish and French Basques, and confirms their genomic distinctiveness from other European populations.
Hum Genet.
128(1):113-117.
Rodríguez-Ezpeleta N., Moreira D., Ruíz-Trillo I. (2010).
Protistas: Amoebozoa, Rhizaria, Excavata y Chromalveolata.
In
El árbol de la vida: sistemática y evolución de los seres vivos
(P. Vargas and R. Zardoya eds.) Editorial Reverte, Barcelona, Spain. In press.
Rodríguez-Suárez E., Gubb E., Frades Alzueta I. , Falcón-Pérez J. M. , Amorim A. , Elortza F., Matthiesen R. (2010).
Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.
Proteomics.
10(8):1545-56.

2009

Collao X., Palacios G., Sanbonmatsu-Gámez S., Pérez-Ruiz M., Negredo A.I., Navarro-Marí J.M., Grandadam M., Aransay A.M., Lipkin W.I., Tenorio A., Sánchez-Seco M.P. (2009).
Genetic diversity of toscana virus.
Emerg Infect Dis.
15:574-7.
Garrett M., Fullaondo A., Troxler L., Micklem G., Gubb D. (2009).
Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes.
BMC Genomics.
10:489.
Hackenberg M., Sturm M., Langenberger D., Falcón-Pérez J.M., Aransay A.M. (2009)
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res.
37: W77-W83.
Liu Y., Leigh J., Brinkmann H., Cushion M.T., Rodríguez-Ezpeleta N., Philippe H. and Lang B.F. (2009).
Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts.
Mol Biol Evol.
26:27-34.
Otaegui D., Zuriarrain O., Castillo-Triviño T., Aransay A.M., Ruíz-Martinez J., Olaskoaga J., Marti-Masso J., Lopez de Munain A. (2009).
Association between synapsin III gene promoter SNPs and multiple sclerosis in Basque patients.
Mult Scler.
15:124-8.
Santin I., Castellanos-Rubio A., Aransay A.M., Gutierrez G., Gaztambide S., Rica I., Vicario J.L., Noble J.A., Castaño L., Bilbao J.R. (2009).
Exploring the diabetogenicity of the HLA-B18-DR3 CEH: independent association with T1D genetic risk close to HLA-DOA.
Genes Immun.
10(6):596-600.
Rodríguez-Ezpeleta N. and Philippe H. (2009).
Phylogenomics.
In
Encyclopaedia of Microbiology (Elsevier Ltd. Oxford, UK)
633-643.
Rodríguez-Ezpeleta N., Teijeiro S., Forget L., Burger G. and Lang B.F.(2009).
Generation of cDNA libraries: protists and fungi.
Expressed Sequence Tags (ESTs), In Methods Mol Biol, (Humana Press Inc.)
1-15.

2008

Castellanos-Rubio A., Martin-Pagola A., Santín I., Hualde I., Aransay A.M., Castaño L., Vitoria J.C., Bilbao J.R. (2008).
Combined functional and positional gene information for the identification of susceptibility variants in celiac disease.
Gastroenterology.
134:738-46.
Martínez-Chantar M.L., Vázquez-Chantada M., Ariz U., Martínez N., Varela M., Luka Z., Capdevila A., Rodríguez J., Aransay A.M., Matthiesen R., Yang H., Calvisi D.F., Esteller M., Fraga M., Lu S.C., Wagner C., Mato J.M. (2008).
Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice.
Hepatology.
47:1191-9.
Santin I., Castellanos-Rubio A., Aransay A.M., Castaño L., Vitoria J.C., Bilbao J.R. (2008).
The functional R620W variant of the PTPN22 gene is associated with celiac disease.
Tissue Antigens.
71:247-9.

2007

O'Doherty C., Roos I.M., Antiguedad A., Aransay A.M., Hillert J., Vandenbroeck K. (2007).
ITGA4 polymorphisms and susceptibility to multiple sclerosis.
J Neuroimmunol.
189:151-7.
Rodríguez-Ezpeleta N., Brinkmann H., Burger G., Roger A.J., Gray M.W., Philippe H. and Lang B.F. (2007).
Toward the resolution of the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans.
Curr Biol.
17:1420-1425.
Rodríguez-Ezpeleta N., Brinkmann H., Roure B., Lartillot N., Lang B.F. and Philippe H. (2007).
Detecting and overcoming systematic errors in genome-scale phylogenies.
Syst Biol.
56:1-11.
Rodríguez-Ezpeleta N., Philippe H., Brinkmann H., Becker B. and Melkonian M. (2007).
Phylogenetic analyses of nuclear, mitochondrial and plastid multi-gene datasets support the placement of Mesostigma in the Streptophyta.
Mol Biol Evol.
24:723-731.
Roure B., Rodríguez-Ezpeleta N. and Philippe H. (2007).
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics.
BMC Evol Biol.
7 (Supp. 1): S2.

2006

Bilbao J.R., Calvo B., Aransay A.M., Martin-Pagola A., Perez de Nanclares G., Aly T.A., Rica I., Vitoria J.C., Gaztambide S., Noble J., Fain P.R., Awdeh Z.L., Alper C.A., Castaño L. (2006).
Conserved extended haplotypes discriminate HLA-DR3-homozygous Basque patients with type 1 diabetes mellitus and celiac disease.
Genes Immun.
7:550-4.
Melero-Alcíbar R., Molina R., Aransay A.M. (2006).
Aportación al conocimiento de la fauna de culícidos (Diptera: Culicidae) de las Islas Baleares: isla de Ibiza.
Boletín Sociedad Entomológica Aragonesa
38:331-332.
Rodríguez-Ezpeleta N. and Philippe H. (2006).
Plastid origin: replaying the tape.
Curr Biol.
16:R53-R56.

2005

Parvizi P., Mauricio I., Aransay A.M., Miles M.A., Ready P.D. (2005).
First detection of Leishmania major in peridomestic Phlebotomus papatasi from Isfahan province, Iran: comparison of nested PCR of nuclear ITS ribosomal DNA and semi-nested PCR of minicircle kinetoplast DNA.
Acta Trop.
93:75-83.
Rodríguez-Ezpeleta N., Brinkmann H., Burey S., Roure B., Burger G., Loffelhardt W., Bohnert H.J., Philippe H. and Lang B.F. (2005).
Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.
Curr Biol.
15:1325-1330.

2004

Aransay A.M., Testa J.M., Morillas-Marquez F., Lucientes J., Ready P.D. (2004).
Distribution of sandfly species in relation to canine leishmaniasis from the Ebro Valley to Valencia, northeastern Spain.
Parasitol Res.
94:416-20.

2003

Aransay A.M., Ready P.D., Morillas-Marquez F. (2003).
Population differentiation of Phlebotomus perniciosus in Spain following postglacial dispersal.
Heredity.
90:316-25.
Leigh J., Seif E., Rodríguez-Ezpeleta N., Jacob Y., Lang B.F. (2003).
Fungal evolution meets fungal genomics.
In
Handbook of Fungal Biotechnology
, 2nd ed. (D. Arora, ed.) pp. 145-161. Marcel Dekker Inc. New York, NY, USA.

2001

Aransay A.M., Malarky G., Ready, P.D. (2001).
Isolation (with enrichment) and characterization of trinucleotide microsatellites from Phlebotomus perniciosus, a vector of Leishmania infantum.
Molecular Ecology Notes.
1:176-178.

2000

Spyridaki I., Psaroulaki A., Aransay A.M., Scoulica E., Tselentis Y. (2000).
Diagnosis of quinolone resistant Coxiella burnetii strains by PCR-RFLP.
Journal of Clinical Laboratory Analysis.
14:59-63.
Aransay A.M., Scoulica E., Tselentis Y. (2000).
Detection and identification of Leishmania DNA within naturally infected sand flies by seminested PCR on minicircle kinetoplastic DNA.
Appl Environ Microbiol.
66:1933-8.
Aransay A.M., Scoulica E., Tselentis Y., Ready P.D. (2000).
Phylogenetic relationships of phlebotomine sandflies inferred from small subunit nuclear ribosomal DNA.
Insect Mol Biol.
9:157-68.

1999

Aransay A.M., Scoulica E., Chaniotis B., Tselentis Y. (1999).
Typing of sandflies from Greece and Cyprus by DNA polymorphism of 18S rRNA gene.
Insect Mol Biol.
8:179-84.