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Journal articles
2018- Violeta Lorén, Arce Garcia-Jaraquemada, Juan Naves, Xavier Carmona, Míriam Mañosa, Ana M. Aransay, José Luis Lavin, Ivelisse Sánchez, Eduard Cabré, Josep Manyé, Eugeni Domènech (2018)
ANP32E, a protein involved in steroid-refractoriness in ulcerative colitis, identified by a systems biology approach
J Crohns Colitis. 2018 Oct 17. doi: 10.1093/ecco-jcc/jjy171. - Mirian Sánchez-Morán, Juan Andrés Hernández, Jon Andoni Duñabeitia, Adelina Estévez, Laura Bárcena, Aintzane González-Lahera, María Teresa Bajo, Luis J Fuentes, Ana M. Aransay*, Manuel Carreiras* (*: Both authors equal contribution) (2018)
Genetic association study of dyslexia and ADHD candidate genes in a Spanish cohort: implications of comorbid samples
PLOS ONE, In press - Lorea Valcarcel, Alice Macchia, Natalia Martin, Ana Rosa Cortazar, Ariane Schaub, Mikel Pujana, Sonia Fernandez, Isabel Lacasa, Aida Santos, Ana Loizaga, Miguel Unda, Ivana Hermanova, Ianire Astobiza, Mariona Graupera, Julia Starkova, James Sutherland, Rosa Barrio, Ana M Aransay, Arkaitz Carracedo, Veronica Torrano (2018)
Integrative analysis of transcriptomic and clinical data uncovers the tumor suppressive activity of MITF in prostate cancer
Cell Death and Disease (2018) 9:1041 DOI 10.1038/s41419-018-1096-6 - Cortazar, A.R., Torrano V., Martín-Martín, N., Caro-Maldonado, A., Camacho, L., Hermanova, Guruceaga, E., Lorenzo-Martín, L.F., Caloto, R., Gomis, R.R., Apaolaza, I., Quesada, V., Trka, J., Gomez-Muñoz, A., Vincent, S., Bustelo, X.R., Planes, F., Aransay, A.M.,*, Carracedo, A.* (*: Both authors equal contribution) (2018)
CANCERTOOL: a visualization and representation interface to exploit cancer datasets
Cancer Res. 2018 Sep 19. pii: canres.1669.2018. doi: 10.1158/0008-5472.CAN-18-1669. - David Fernández-Ramos, Pablo Fernández-Tussy, Fernando Lopitz-Otsoa, Virginia Gutiérrez-de Juan, Nicolás Navasa, Lucía Barbier-Torres, Imanol Zubiete-Franco, Jorge Simón, Agustín F Fernández, Ander Arbelaiz, Ana M. Aransay, José Luis Lavín, Naiara Beraza, María J. Perugorria, Jesús Banales, Erica Villa, Mario F. Fraga, Juan Anguita, Matías Avila, Carmen Berasain, Paula Iruzubieta, Javier Crespo, Shelly Lu, Marta Varela-Rey, Jose Mato, Teresa C. Delgado and Maria Luz Martinez-Chantar (2018)
MiR-873-5p acts as an epigenetic regulator in early stages of liver fibrosis and cirrhosis
Cell Death and Disease, 9:958 - Pazos Obregón F, Soto P, Lavín JL, Cortazar AR, Barrio R, Aransay AM, Cantera R. (2018)
Cluster Locator, online analysis and visualization of gene clustering.
Bioinformatics, Volume 34, Issue 19, 1 October 2018, Pages 3377 - 3379. doi: 10.1093/bioinformatics/bty336. - Julen Tomás-Cortazar*; Laura Plaza-Vinuesa*; Blanca de las Rivas; Jose Luis Lavin; Diego Barriales; Leticia Abecia; Jose Miguel Mancheño; Ana Maria Aransay; Rosario Muñoz; Juan Anguita*; Hector Rodriguez* (2018)
Identification of a highly active tannase enzyme from the oral pathogen Fusobacterium nucleatum subsp. Polymorphum.
Microbial Cell Factories, 17(1):33. doi: 10.1186/s12934-018-0880-4 - Carreras-González A, Navasa N, Martín-Ruiz I, Lavín JL, Azkargorta M, Atondo E, Barriales D, Macías-Cámara N, Pascual-Itoiz MA, Sampedro L, Tomás-Cortázar J, Peña-Cearra A, Pellón A, Prados-Rosales R, Abecia L, Elortza F, Aransay AM, Rodríguez H, Anguita J. (2018)
A multi-omic analysis reveals the regulatory role of CD180 during the response of macrophages to Borrelia burgdorferi.
Emerg Microbes Infect. 2018 Mar 7;7(1):19. doi: 10.1038/s41426-017-0018-5.
- Caro-Maldonado A, Camacho L, Zabala-Letona A, Torrano V, Fernández-Ruiz S, Zamacola-Bascaran K, Arreal L, Valcárcel-Jiménez L, Martín-Martín N, Flores JM, Cortazar AR, Zúñiga-García P, Arruabarrena-Aristorena A, Guillaumond F, Cabrera D, Falcón-Perez JM, Aransay AM, Gomez-Muñoz A, Olivan M, Morote J, Carracedo A. (2017)
Low-dose statin treatment increases prostate cancer aggressiveness.
Oncotarget. 2017 Oct 31;9(2):1494-1504. doi: 10.18632/oncotarget.22217. - Zabala-Letona A, Arruabarrena-Aristorena A, Martín-Martín N, Fernandez-Ruiz S, Sutherland JD, Clasquin M, Tomas-Cortazar J, Jimenez J, Torres I, Quang P, Ximenez-Embun P, Bago R, Ugalde-Olano A, Loizaga-Iriarte A, Lacasa-Viscasillas I, Unda M, Torrano V, Cabrera D, van Liempd SM, Cendon Y, Castro E, Murray S, Revandkar A, Alimonti A, Zhang Y, Barnett A, Lein G, Pirman D, Cortazar AR, Arreal L, Prudkin L, Astobiza I, Valcarcel-Jimenez L, Zuñiga-García P, Fernandez-Dominguez I, Piva M, Caro-Maldonado A, Sánchez-Mosquera P, Castillo-Martín M, Serra V, Beraza N, Gentilella A, Thomas G, Azkargorta M, Elortza F, Farràs R, Olmos D, Efeyan A, Anguita J, Muñoz J, Falcón-Pérez JM, Barrio R, Macarulla T, Mato JM, Martinez-Chantar ML, Cordon-Cardo C, Aransay AM, Marks K, Baselga J, Tabernero J, Nuciforo P, Manning BD, Marjon K, Carracedo A. (2017)
Corrigendum: mTORC1-dependent AMD1 regulation sustains polyamine metabolism in prostate cancer.
Nature. 2018 Feb 22;554(7693):554. doi: 10.1038/nature25470 - Iruarrizaga-Lejarreta M, Varela-Rey M, Fernández-Ramos D, Martínez-Arranz I, Delgado TC, Simon J, Juan VG, delaCruz-Villar L, Azkargorta M, Lavin JL, Mayo R, Van Liempd SM, Aurrekoetxea I, Buqué X, Cave DD, Peña A, Rodríguez-Cuesta J, Aransay AM, Elortza F, Falcón-Pérez JM, Aspichueta P, Hayardeny L, Noureddin M, Sanyal AJ, Alonso C, Anguita J, Martínez-Chantar ML, Lu SC, Mato JM. (2017)
Role of Aramchol in steatohepatitis and fibrosis in mice.
Hepatol Commun. 2017 Nov; 1(9):911-927. doi: 10.1002/hep4.1107 - Martín-Martín N, Zabala-Letona A, Fernández-Ruiz S, Arreal L, Camacho L, Castillo-Martin M, Cortazar AR, Torrano V, Astobiza I, Zúñiga-García P, Ugalde-Olano A, Loizaga-Iriarte A, Unda M, Valcárcel-Jiménez L, Arruabarrena-Aristorena A, Piva M, Sánchez-Mosquera P, Aransay AM, Gomez-Muñoz A, Barrio R, Sutherland JD, Carracedo A.(2017)
PPARδ Elicits Ligand-Independent Repression of Trefoil Factor Family to Limit Prostate Cancer Growth.
Cancer Res. 2018 Jan 15;78(2):399-409. doi: 10.1158/0008-5472.CAN-17-0908. - Torrano V, Valcarcel-Jimenez L, Cortazar AR, Liu X, Urosevic J, Castillo-Martin M, Fernández-Ruiz S, Morciano G, Caro-Maldonado A, Guiu M, Zúñiga-García P, Graupera M, Bellmunt A, Pandya P, Lorente M, Martín-Martín N, Sutherland JD, Sanchez-Mosquera P, Bozal-Basterra L, Zabala-Letona A, Arruabarrena-Aristorena A, Berenguer A, Embade N, Ugalde-Olano A, Lacasa-Viscasillas I, Loizaga-Iriarte A, Unda-Urzaiz M, Schultz N, Aransay AM, Sanz-Moreno V, Barrio R, Velasco G, Pinton P, Cordon-Cardo C, Locasale JW, Gomis RR, Carracedo A. (2017)
Erratum: The metabolic co-regulator PGC1α suppresses prostate cancer metastasis.
Nat Cell Biol. 2017 Jun 29;19(7):873. doi: 10.1038/ncb3558. - Julen Tomás-Cortázar, Itziar Martín-Ruiz, Diego Barriales, Miguel Ángel Pascual-Itoiz, Virginia Gutiérrez de Juan, Alfredo Caro-Maldonado, Nekane Merino, Alberto Marina, Francisco J. Blanco, Juana María Flores, James D. Sutherland, Rosa Barrio, Adriana Rojas, María Luz Martínez-Chantar, Arkaitz Carracedo, Carolina Simó, Virginia García-Cañas, Leticia Abecia, José Luis Lavín, Ana M. Aransay, Héctor Rodríguez, Juan Anguita (2017)
The immunosuppressive effect of the tick protein, Salp15, is long-lasting and persists in a murine model of hematopoyetic transplant.
Scientific Reports 7: 10740 (DOI:10.1038/s41598-017-11354-2) - Zabala-Letona A, Arruabarrena-Aristorena A, Martín-Martín N, Fernandez-Ruiz S, Sutherland JD, Clasquin M, Tomas-Cortazar J, Jimenez J, Torres I, Quang P, Ximenez-Embun P, Bago R, Ugalde-Olano A, Loizaga-Iriarte A, Lacasa-Viscasillas I, Unda M, Torrano V, Cabrera D, van Liempd SM, Cendon Y, Castro E, Murray S, Revandkar A, Alimonti A, Zhang Y, Barnett A, Lein G, Pirman D, Cortazar AR, Arreal L, Prudkin L, Astobiza I, Valcarcel-Jimenez L, Zuñiga-García P, Fernandez-Dominguez I, Piva M, Caro-Maldonado A, Sánchez-Mosquera P, Castillo-Martín M, Serra V, Beraza N, Gentilella A, Thomas G, Azkargorta M, Elortza F, Farrà s R, Olmos D, Efeyan A, Anguita J, Muñoz J, Falcón-Pérez JM, Barrio R, Macarulla T, Mato JM, Martinez-Chantar ML, Cordon-Cardo C, Aransay AM, Marks K, Baselga J, Tabernero J, Nuciforo P, Manning BD, Marjon K, Carracedo A. (2017)
mTORC1-dependent AMD1 regulation sustains polyamine metabolism in prostate cancer.
Nature. 2017 Jul 6;547(7661):109-113. doi: 10.1038/nature22964 - Belén Rivero-Gutiérrez, Reyes Gámez-Belmonte, María Dolores Suárez, José Luis Lavín, Ana María Aransay, Mónica Olivares, Olga Martínez-Augustin, Fermín Sánchez de Medina, Antonio Zarzuelo (2017)
A synbiotic composed of Lactobacillus fermentum CECT5716 and FOS prevents the development of fatty acid liver and glycemic alterations in rats fed a high fructose diet associated with changes in the microbiota
Molecular Nutrition and Food Research 61(8), (2017), doi:10.1002/mnfr.201600622 - Lavín JL, Sánchez-Morán M, Bárcena L, Cortazar AR, Macías-Cámara N, González M, Aransay AM.
A fistful of tips for a fruitful high throughput sequencing experiment.
Bioessays. 39 - 5, Wiley Online Library, 05/2017. - Ana R. Cortazar, José A. Oguiza, Ana M. Aransay*, José L. Lavín* (*, both corresponding authors) (2017)
VerSeDa: vertebrate secretome database
Database (Oxford). 2017 Jan 1;2017 - Ramon M Rodriguez, Beatriz Suarez-Alvarez, José L Lavín, David Mosén-Ansorena, Aroa Baragaño Raneros, Leonardo Márquez-Kisinousky, Ana M. Aransay, Carlos Lopez-Larrea (2017)
Epigenetic networks regulate the transcriptional program in memory and terminally differentiated CD8+ T cells
Journal of Immunology 198(2):937-949 (2017) - Suarez-Alvarez, Beatriz; Rodriguez, Ramón; Schlangen, Karin; Baragaño Raneros, Aroa; Márquez-Kisinousky, Leonardo; Fernandez, Agustin; Diaz-Corte, Carmen, Aransay, Ana M.; López-Larrea, Carlos
Phenotypic characteristics of aged CD4+ CD28null T lymphocytes are determined by changes in the whole genome DNA methylation pattern
Aging Cell 16(2):293-303 [DOI: 10.1111/acel.12552]
- Natalia Martín-Martín, Marco Piva, Jelena Urosevic, Paula Aldaz, James D. Sutherland, Sonia Fernández-Ruiz, Leire Arreal, Verónica Torrano, Ana R. Cortazar, Evarist Planet, Marc Guiu, Nina Radosevic-Robin, Stephane Garcia, Iratxe Macías, Fernando Salvador, Giacomo Domenici, Oscar M. Rueda, Amaia Zabala-Letona, Amaia Arruabarrena-Aristorena, Patricia Zuñiga-García, Alfredo Caro-Maldonado, Lorea Valcárcel-Jiménez, Pilar Sánchez-Mosquera, Marta Varela-Rey, Maria Luz Martínez-Chantar, Juan Anguita, Yasir Ibrahim, Maurizio Scaltriti, Charles H. Lawrie, Ana M. Aransay, Juan L. Iovanna, Jose Baselga, Carlos Caldas, Rosa Barrio, Violeta Serra, Maria dM Vivanco, Ander Matheu, Roger R. Gomis, Arkaitz Carracedo (2016)
Stratification and therapeutic potential of PML in metastatic breast cancer
Nat Com 7: article 12595 - Verónica Torrano, Lorea Valcarcel-Jimenez, Ana Rosa Cortazar, Xiaojing Liu, Jelena Urosevic, Mireia Castillo-Martin, Sonia Fernández-Ruiz, Giampaolo Morciano, Alfredo Caro-Maldonado, Marc Guiu, Patricia Zuñiga-García, Mariona Graupera, Anna Bellmunt, Pahini Pandya, Mar Lorente, Natalia Martín-Martín, James David Sutherland, Pilar Sanchez-Mosquera, Laura Bozal, Amaia Zabala-Letona, Amaia Arruabarrena-Aristorena1, Antonio Berenguer, Nieves Embade, Aitziber Ugalde-Olano, Isabel Lacasa-Viscasillas, Ana Loizaga-Iriarte, Miguel Unda-Urzaiz, Nikolaus Schultz, Ana Maria Aransay, Victoria Sanz-Moreno, Rosa Barrio, Guillermo Velasco, Paolo Pinton, Carlos Cordon-Cardo, JasonW. Locasale, Roger R. Gomis and Arkaitz Carracedo (2016)
The metabolic co-regulator PGC1α suppresses prostate cancer metastasis
Nature Cell Biol 18(6):645-56 (DOI: 10.1038/ncb3357) - Felix Royo, Patricia Zuñiga-García, Verónica Torrano, Ana Loizaga, Pilar Sanchez-Mosquera, Aitziber Ugalde-Olano, Esperanza González, Ana R. Cortazar, Laura Palomo, Sonia Fernández-Ruiz, Isabel Lacasa-Viscasillas, Maria Berdasco, James D. Sutherland, Rosa Barrio, Amaia Zabala-Letona, Natalia Martín-Martín, Amaia Arruabarrena-Aristorena, Lorea Valcarcel-Jimenez, Alfredo Caro-Maldonado, Jorge Gonzalez-Tampan, Guido Cachi-Fuentes, Manel Esteller, Ana M. Aransay, Miguel Unda, Juan M. Falcón-Pérez, Arkaitz Carracedo (2016)
Transcriptomic profiling of urine extracellular vesicles reveals alterations of CDH3 in prostate cancer
Oncotarget 7(6):6835-6846 (DOI: 10.18632/oncotarget.6899)
- Ana R. Cortazar, José A. Oguiza, Ana M. Aransay*, José L. Lavín* (*, both corresponding authors). (2015)
PECAS: Prokaryotic and Eukaryotic Classical Analysis of Secretome
Amino Acids. 2015 Dec;47(12):2659-63. doi: 10.1007/s00726-015-2058-2 - Lucy Carty, Jose A. Gomez-Sanchez, Marta Iruarrizaga-Lejarreta, Marta Palomo-Irigoyen, Marta Varela-Rey, Megan Griffith, Janina Hantke, Nuria Macias, Mikel Azkargorta, Igor Aurrekoetxea, Virginia Gutiérrez-De Juan, Harold B. J. Jefferies, Patricia Aspichueta, Félix Elortza, Ana M. Aransay, María L. Martínez-Chantar, Frank Baas, José M. Mato, Rhona Mirsky, Ashwin Woodhoo, Kristján R. Jessen. (2015)
Schwann cell autophagy, myelinophagy, clears myelin from injured nerves
Journal of Cell Biology 210(1):153-168 - Ugalde-Olano A, Egia A, Fernández-Ruiz S, Loizaga-Iriarte A, Zuñiga-García P, Garcia S, Royo F, Lacasa-Viscasillas I, Castro E, Cortazar AR, Zabala-Letona A, Martín-Martín N, Arruabarrena-Aristorena A, Torrano-Moya V, Valcárcel-Jiménez L, Sánchez-Mosquera P, Caro-Maldonado A, González-Tampan J, Cachi-Fuentes G, Bilbao E, Montero R, Fernández S, Arrieta E, Zorroza K, Castillo-Martín M, Serra V, Salazar E, Macías-Cámara N, Tabernero J, Baselga J, Cordón-Cardo C, Aransay AM, Villar AD, Iovanna JL, Falcón-Pérez JM, Unda M, Bilbao R, Carracedo A. (2015)
The study of prostate cancer as a disease driven by altered PTEN function: How to overcome the methodological challenges
Methods 77-78:25-30 - María Salazar, Mar Lorente, Elena García-Taboada, Eduardo Pérez Gómez, David Dávila, Patricia Zúñiga-García, Juana María Flores, Antonio Rodríguez, Zoltan Hegedus, David Mosén-Ansorena, Ana M. Aransay, Sonia Hernández-Tiedra, Israel López-Valero, Miguel Quintanilla, Cristina Sánchez, Juan L. Iovanna, Nelson Dusetti, Manuel Guzmán, Sheila E. Francis, Arkaitz Carracedo, Endre Kiss-Toth and Guillermo Velasco. (2015)
TRIB3 suppresses tumorigenesis by controling mTORC2/AKT/FOXO signaling
Molecular & Cellular Oncology 2(3): e980134 - Rodriguez RM, Suarez-Alvarez B, Mosen-Ansorena D, Garcia-Peydro, M, Fuentes P, Garcia-Leon MJ, Gonzalez-Lahera A, Macias-Camara N, Toribio ML, Aransay AM, Lopez-Larrea C. (2015)
Regulation of the transcriptional program by DNA methylation during human αβ T-cell developmentNucleic Acids Research43(2):760-774 - Salazar M, Lorente M, García-Taboada E, Pérez Gómez E, Dávila D, Zúñiga-García P, María Flores J, Rodríguez A, Hegedus Z, Mosén-Ansorena D, Aransay AM, Hernández-Tiedra S, López-Valero I, Quintanilla M, Sánchez C, Iovanna JL, Dusetti N, Guzmán M, Francis SE, Carracedo A, Kiss-Toth E, Velasco G. (2015)
Loss of Tribbles Pseudokinase-3 promotes AKT-driven tumorigenesis via selective FOXO inactivationCell Death and Differentiation22(1):131-44
- Rafael Cantera, Maria J, Ferreiro, Ana M. Aransay and Rosa Barrio(2014)
Global gene expression shift during the transition from early neural development to late neuronal differentiation in Drosophila melanogaster.
PLOs ONE 9(5): e97703 - Arantza Infante, Andrea Gago, Garbiñe Ruiz de Eguino, Teresa Calvo-Fernández, Vanessa Gómez-Vallejo, Jordi Llop, Karin Schlangen, Ane Fullaondo, Ana M. Aransay, Abraham Martín, and Clara I. Rodríguez(2014)
Prelamin A accumulation and stress conditions induce impaired Oct-1 activity and autophagy in prematurely aged human mesenchymal stem cells.
AGING-US (Albany NY) 6(4):264-80 (2014) - David Mosén-Ansorena, Naiara Tellería, Silvia Veganzones, Virginia de la Orden, María Luisa Maestro and Ana M. Aransay(2014)
seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing.
BMC genomics 15 (1), 178 - Marta Varela-Rey, Marta Iruarrizaga-Lejarreta, Juan José Lozano, Ana María Aransay, Agustín F. Fernandez, José Luis Lavin, David Mósen-Ansorena, María Berdasco, Marc Turmaine, Zigmund Luka, Conrad Wagner, Shelly C. Lu, Manel Esteller, Rhona Mirsky, Kristján R. Jessen, Mario F. Fraga, María L. Martínez-Chantar, José M. Mato, Ashwin Woodhoo (2014)
S-adenosylmethionine levels regulate the Schwann cell DNA methylome.
Neuron 81 (5), 1024-1039)
- Cortázar AR, Aransay AM, Alfaro M, Oguiza JA, Lavín JL (2014)
SECRETOOL: integrated secretome analysis tool for fungi.
Amino Acids. 46(2):471-3. - José Luis Lavín, Marina Marcet-Houben, Raquel L. Gutiérrez-Vázquez, Lucía Ramírez, Antonio G. Pisabarro, Toni Gabaldón, José A. Oguiza (2013)
FUNGALOXPHOS: An integrated database for oxidative phosphorylation in fungi.
Mitochondrion.E pub 2013 April 26. - Vazquez-Chantada M, Gonzalez-Lahera A, Martinez-Arranz I, Garcia-Monzon C, Regueiro MM, Garcia-Rodriguez JL, Schlangen KA, Mendibil I, Rodriguez-Ezpeleta N, Lozano JJ, Banasik K, Justesen JM, Joergensen T, Witte DR, Lauritzen T, Hansen T, Pedersen O, Veyrie N, Clement K, Tordjman J, Tran A, Le Marchand-Brustel Y, Buque X, Aspichueta P, Echevarria-Uraga JJ, Martin-Duce A, Caballeria J, Gual P, Castro A, Mato JM, Martinez-Chantar ML, Aransay AM.(2013).
Solute carrier family 2 member 1 is involved in the development of nonalcoholic fatty liver disease.
Hepatology. 2013 Feb; 57(2):505-14. doi: 10.1002/hep.26052. Epub 2012 Nov 27.
PMID: 22961556 [PubMed - in process] - Mosén-Ansorena D, Aransay AM. (2013)
Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.
BMC Bioinformatics; 14:84.
- Ferreiro MJ, Rodríguez-Ezpeleta N, Pérez C, Hackenberg M, Aransay AM, Barrio R, Cantera R.(2012).
Whole transcriptome analysis of a reversible neurodegenerative process in Drosophila reveals potential neuroprotective genes.
BMC Genomics. 2012 Sep 15; 13:483. doi: 10.1186/1471-2164-13-483.
PMID: 22978642 [PubMed - in process] - Mosén-Ansorena D, Rodríguez-Ezpeleta N, Aransay AM. (2012)
Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data.
BMC Bioinformatics, 13:192. - José Luis Lavín, Alberto García-Yoldi, Lucía Ramírez, Antonio G. Pisabarro, José A. Oguiza (2012)
Two-component signal transduction in Agaricus bisporus: A comparative genomic analysis with other basidiomycetes through the web-based tool BASID2CS.
Fungal Genet Biol. Epub 2012 Oct 31. - Ruiz de Eguino G, Infante A, Schlangen K, Aransay AM, Fullaondo A, Soriano M, García-Verdugo JM, Martín AG, Rodríguez CI.(2012).
Sp1 transcription factor interaction with accumulated prelamin a impairs adipose lineage differentiation in human mesenchymal stem cells: essential role of sp1 in the integrity of lipid vesicles.
Stem Cells Transl Med. 2012 Apr; 1(4):309-21. doi: 10.5966/sctm.2011-0010. Epub 2012 Apr 2.
PMID: 23197810 [PubMed - indexed for MEDLINE] - Martínez-López N, García-Rodríguez JL, Varela-Rey M, Gutiérrez V, Fernández-Ramos D, Beraza N, Aransay AM , Schlangen K, Lozano JJ, Aspichueta P, Luka Z, Wagner C, Evert M, Calvisi DF, Lu SC, Mato JM, Martínez-Chantar ML.(2012).
Hepatoma cells from mice deficient in glycine N-methyltransferase have increased RAS signaling and activation of liver kinase B1.
Gastroenterology. 2012 Sep; 143(3):787-98.e1-13. doi: 10.1053/j.gastro.2012.05.050. Epub 2012 Jun 8.
PMID: 22687285 [PubMed - indexed for MEDLINE] - Lario S, Ramírez-Lázaro MJ, Aransay AM , Lozano JJ, Montserrat A, Casalots á, Junquera F, álvarez J, Segura F, Campo R, Calvet X.(2012).
microRNA profiling in duodenal ulcer disease caused by Helicobacter pylori infection in a Western population.
Clin Microbiol Infect. 2012 Aug; 18(8):E273-82. doi: 10.1111/j.1469-0691.2012.03849.x. Epub 2012 Apr 24.
PMID: 22524533 [PubMed - indexed for MEDLINE] - Iruarrizaga-Lejarreta M, Varela-Rey M, Lozano JJ, Fernández-Ramos D, Rodríguez-Ezpeleta N, Embade N, Lu SC, van der Kraan PM, Blaney Davidson EN, Gorospe M, Mirsky R, Jessen KR, Aransay AM , Mato JM, Martínez-Chantar ML, Woodhoo A.(2012).
The RNA-binding protein human antigen R controls global changes in gene expression during Schwann cell development.
J Neurosci. 2012 Apr 4; 32(14):4944-58. doi: 10.1523/JNEUROSCI.5868-11.2012. - Díaz-Peña R, Aransay AM , Suárez-álvarez B, Bruges-Armas J, Rodríguez-Ezpeleta N, Regueiro M, Pimentel-Santos FM, Mulero J, Sánchez A, Collantes E, Queiro R, Ballina J, Alves H, López-Larrea C. (2012).
A high density SNP genotyping approach within the 19q13 chromosome region identifies an association of a CNOT3 polymorphism with ankylosing spondylitis.
Ann Rheum Dis. 2012 May; 71(5):714-7. doi: 10.1136/annrheumdis-2011-200661. Epub 2012 Jan 31. - Fullaondo A , Lee SY (2012).
Regulation of Drosophila-virus interaction.
Dev Comp Immunol.36, 2, 262-6. - Fullaondo A , Lee SY (2012).
Identification of putative miRNA involved in Drosophila melanogaster immune response.
Dev Comp Immunol.36, 2, 267-73.
- Carina Elizalde, Victor M. Campa, Mercedes Caro, Karin Schlangen, Ana M. Aransay , Maria dM Vivanco, Robert M. Kypta (2011).
Distinct roles for Wnt-4 and Wnt-11 during retinoic acid-induced neuronal differentiation
Stem Cells 29,141-153 - Díaz-Peña R, Aransay AM , Bruges-Armas J, López-Vázquez A, Rodríguez-Ezpeleta N, Mendibil I , Sánchez A, Torre-Alonso JC, Bettencourt BF, Mulero J, Collantes E, López-Larrea C(2011).
Fine mapping of a major histocompatibility complex in ankylosing spondylitis: Association of the HLA-DPA1 and HLA-DPB1 regions.
Arthritis Rheum. 63(11),3305-12. - Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM (2011).
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W132-8. doi: 10.1093/nar/gkr247 - Vandenbroeck K, Alvarez J, Swaminathan B, Alloza I, Matesanz F, Urcelay E, Comabella M, Alcina A, Fedetz M, Ortiz MA, Izquierdo G, Fernandez O, Rodriguez-Ezpeleta N, Matute C, Caillier S, Arroyo R, Montalban X, Oksenberg JR, Antigüedad A, Aransay A (2011).
A cytokine gene screen uncovers SOCS1 as genetic risk factor for multiple sclerosis.
Genes Immun. 2012 Jan;13(1):21-8. doi: 10.1038/gene.2011.44 - Fullaondo A , S. García-Sánchez, A. Sanz-Parra, E. Recio, S-Y. Lee and D. Gubb (2011).
Spn1 regulates the GNBP3-dependent Toll-signalling pathway in Drosophila melanogaster
Mol Cell Biol. 2011 Jul;31(14):2960-72. doi: 10.1128/MCB.01397-10
- Aransay A.M. , Matthiesen R. and Regueiro M.M. (2010).
SNP-PHAGE. High throughput SNP discovery pipeline.
Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)593:49-65. - Baurain D., Brinkmann H., Petersen J., Rodríguez-Ezpeleta N. , Stechmann A., Demoulin V., Roger A.J., Burger G., Lang B.F., Philippe H. (2010).
Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes and stramenopiles.
Mol Biol Evol. 27:1698-709. - Gubb E. and Matthiesen R. (2010).
Introduction to omics.
Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)593:1-23. - Rodríguez-Ezpeleta N. , Álvarez-Busto J., Imaz L. , Regueiro M., Azcárate M.N., Bilbao R., Iriondo M., Gil A., Estonba A., Aransay A.M. (2010).
High-density SNP genotyping detects homogeneity of Spanish and French Basques, and confirms their genomic distinctiveness from other European populations.
Hum Genet.128(1):113-117. - Rodríguez-Ezpeleta N. , Moreira D., Ruíz-Trillo I. (2010).
Protistas: Amoebozoa, Rhizaria, Excavata y Chromalveolata.
In El árbol de la vida: sistemática y evolución de los seres vivos (P. Vargas and R. Zardoya eds.) Editorial Reverte, Barcelona, Spain. - Rodríguez-Suárez E., Gubb E. , Frades Alzueta I. , Falcón-Pérez J. M. , Amorim A. , Elortza F., Matthiesen R. (2010).
Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.
Proteomics.10(8):1545-56.
- Collao X., Palacios G., Sanbonmatsu-Gámez S., Pérez-Ruiz M., Negredo A.I., Navarro-Marí J.M., Grandadam M., Aransay A.M. , Lipkin W.I., Tenorio A., Sánchez-Seco M.P. (2009).
Genetic diversity of toscana virus.
Emerg Infect Dis. 15:574-7. - Garrett M., Fullaondo A. , Troxler L., Micklem G., Gubb D. (2009).
Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes.
BMC Genomics.10:489. - Hackenberg M., Sturm M., Langenberger D., Falcón-Pérez J.M., Aransay A.M. (2009)
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.
Nucleic Acids Res. 37: W77-W83. - Liu Y., Leigh J., Brinkmann H., Cushion M.T., Rodríguez-Ezpeleta N. , Philippe H. and Lang B.F. (2009).
Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts.
Mol Biol Evol.26:27-34 - Otaegui D., Zuriarrain O., Castillo-Triviño T., Aransay A.M. , Ruíz-Martinez J., Olaskoaga J., Marti-Masso J., Lopez de Munain A. (2009).
Association between synapsin III gene promoter SNPs and multiple sclerosis in Basque patients.
Mult Scler.15:124-8. - Santin I., Castellanos-Rubio A., Aransay A.M. , Gutierrez G., Gaztambide S., Rica I., Vicario J.L., Noble J.A., Castaño L., Bilbao J.R. (2009).
Exploring the diabetogenicity of the HLA-B18-DR3 CEH: independent association with T1D genetic risk close to HLA-DOA.
Genes Immun. 10(6):596-600. - Rodríguez-Ezpeleta N. and Philippe H. (2009).
Phylogenomics
In Encyclopaedia of Microbiology (Elsevier Ltd. Oxford, UK) 633-643. - Rodríguez-Ezpeleta N. , Teijeiro S., Forget L., Burger G. and Lang B.F.(2009).
Generation of cDNA libraries: protists and fungi
Expressed Sequence Tags (ESTs), In Methods Mol Biol, (Humana Press Inc.) 1-15.
- Castellanos-Rubio A., Martin-Pagola A., Santín I., Hualde I., Aransay A.M. , Castaño L., Vitoria J.C., Bilbao J.R. (2008).
Combined functional and positional gene information for the identification of susceptibility variants in celiac disease.
Gastroenterology.134:738-46. - Martínez-Chantar M.L., Vázquez-Chantada M., Ariz U., Martínez N., Varela M., Luka Z., Capdevila A., Rodríguez J., Aransay A.M. , Matthiesen R., Yang H., Calvisi D.F., Esteller M., Fraga M., Lu S.C., Wagner C., Mato J.M. (2008).
Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice.
Hepatology. 47:1191-9. - Santin I., Castellanos-Rubio A., Aransay A.M. , Castaño L., Vitoria J.C., Bilbao J.R. (2008).
The functional R620W variant of the PTPN22 gene is associated with celiac disease.
Tissue Antigens. 71:247-9.
Edited books
- Lavín-Trueba, J.L. and Aransay, A.M. (2016)
Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing.
Springer, New York, NY, USA, (ISBN 978-3-319-31348-1) (DOI: 10.1007/978-3-319-31350-4). - Rodriguez-Ezpeleta N., Hackenberg M. and Aransay A.M. (2012)
Bioinformatics for High Throughput Sequencing
Springer, New York, NY, USA. (Hardcover: ISBN 978-1-4614-0781-2; eBook: SBN 978-1-4614-0782-9).
Book chapters
- Teresa Cardoso Delgado, Mikel Azkargorta, Jose Luis Lavín-Trueba, Marta Varela-Rey, Monika Gonzalez, José M. Mato, Felix Elortza, Ana M. Aransay, María-Luz Martínez-Chantar (2018)
Biomarkers in NAFLD
Chapter 5 at "FATTY LIVER DISEASE: a reality with many questions". Eds. Jose Luis Olcoz Goñi & Francisco
Jorquera Plaza. EOLAS ediciones - Lavín-Trueba, J.L. and Aransay, A.M. (2016)
The High Throughput Sequencing technologies triple-W discussion: Why to use HTS, What is the optimal HTS method to use, Which data analysis workflow to follow
Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing. - Ana M. Aransay, Laura Barcena, Aintzane Gonzalez-Lahera, Nuria Macias-Camara. (2015)
Chapter 5: Single cell genome and transcriptome processing prior to high-throughput sequencing
Mammary Stem Cells: Methods in Molecular Biology 1293 (Humana Press, Ed: Maria dM Vivanco) Chapter 5, pp:83-114 - Rodriguez-Ezpeleta N., Aransay A.M. .(2012).
Introduction
Bioinformatics for High Throughput Sequencing, pp. 1-9 - Aransay A.M. , Matthiesen R. and Regueiro M.M.(2010).
SNP-PHAGE. High throughput SNP discovery pipeline
Bioinformatics in clinical omics research, In Methods Mol Biol.(Humana Press Inc.) 593:49-65